Bioanalytical applications of microfluidic devices

The first part of the thesis describes a new patterning technique--microfluidic contact printing--that combines several of the desirable aspects of microcontact printing and microfluidic patterning and addresses some of their important limitations through the integration of a track-etched polycarbonate (PCTE) membrane. Using this technique, biomolecules (e.g., peptides, polysaccharides, and proteins) were printed in high fidelity on a receptor modified polyacrylamide hydrogel substrate. The patterns obtained can be controlled through modifications of channel design and secondary programming via selective membrane wetting. The protocols support the printing of multiple reagents without registration steps and fast recycle times. The second part describes a non-enzymatic, isothermal method to discriminate single nucleotide polymorphisms (SNPs). SNP discrimination using alkaline dehybridization has long been neglected because the pH range in which thermodynamic discrimination can be done is quite narrow. We found, however, that SNPs can be discriminated by the kinetic differences exhibited in the dehybridization of PM and MM DNA duplexes in an alkaline solution using fluorescence microscopy. We combined this method with multifunctional encoded hydrogel particle array (fabricated by stop-flow lithography) to achieve fast kinetics and high versatility. This approach may serve as an effective alternative to temperature-based method for analyzing unamplified genomic DNA in point-of-care diagnostic

The Nonlinear Talbot Effect of Rogue Waves

Akhmediev and Kuznetsov-Ma breathers are rogue wave solutions of the nonlinear Schr\"odinger equation (NLSE). Talbot effect (TE) is an image recurrence phenomenon in the diffraction of light waves. We report the nonlinear TE of rogue waves in a cubic medium. It is different from the linear TE, in that the wave propagates in a NL medium and is an eigenmode of NLSE. Periodic rogue waves impinging on a NL medium exhibit recurrent behavior, but only at the TE length and at the half-TE length with a \pi-phase shift; the fractional TE is absent. The NL TE is the result of the NL interference of the lobes of rogue wave breathers. This interaction is related to the transverse period and intensity of breathers, in that the bigger the period and the higher the intensity, the shorter the TE length.Comment: 4 pages, 4 figure

Fresnel diffraction patterns as accelerating beams

We demonstrate that beams originating from Fresnel diffraction patterns are self-accelerating in free space. In addition to accelerating and self-healing, they also exhibit parabolic deceleration property, which is in stark contrast to other accelerating beams. We find that the trajectory of Fresnel paraxial accelerating beams is similar to that of nonparaxial Weber beams. Decelerating and accelerating regions are separated by a critical propagation distance, at which no acceleration is present. During deceleration, the Fresnel diffraction beams undergo self-smoothing, in which oscillations of the diffracted waves gradually focus and smooth out at the critical distance

An Efficient Numerical Inverse Scattering Algorithm for Generalized Zakharov-Shabat Equations with Two Potential Functions

rapport de rechercheThe inverse scattering problem for coupled wave equations has various applications such as waveguide filter design and electric transmission line fault diagnosis. In this paper, an efficient numerical algorithm is presented for solving the inverse scattering problem related to generalized Zakharov-Shabat equations with two potential functions. Inspired by the work of Xiao and Yashiro on Zakharov-Shabat equations with a single potential function, this new algorithm considerably improves the numerical efficiency of an algorithm proposed by Frangos and Jaggard, by transforming the original iterative algorithm to a one-shot algorithm

Protective Effect of Hepatitis B Vaccine Combined with Two-Dose Hepatitis B Immunoglobulin on Infants Born to HBsAg-Positive Mothers

Despite the use of hepatitis B (HB) vaccine and hepatitis B immunoglobulin (HBIG), a portion of infants are still non- or low-responders, or even immunoprophylaxis failure. We aimed to determine the immune response in the infants from the mothers being positive for hepatitis B surface antigen (HBsAg), by which the infants received three doses of HB vaccine in combination with two-dose 200 IU HBIG injections.In this retrospective study, 621 infants from HBsAg-positive mothers in Beijing YouAn Hospital between January 2008 and December 2009 were included. All the infants were given three doses of 10 µg HB vaccine (at 0, 1 and 6 months of age) and two-dose of 200 IU HBIG (at birth and in 2 weeks of age). Serum HBsAg and antibody to HBsAg (anti-HBs) in all the infants were determined at 7 months of age.Of the 621 infants, 2.9% were immunoprophylaxis failure (positive for HBsAg), 1.4% were non-responders (anti-HBs undetectable), 95.7% were responders. The 594 responders could be categorized into three subsets, 22 were 10 to 99 IU/L for anti-HBs levels, 191 were 100 to 999 IU/L, and 381 were ≥1000 IU/L. The immunoprophylaxis failure rate was at 0% and 5.2% for the infants of HBeAg-negative and HBeAg-positive mothers(P<0.001). Infants from mothers with detectable HBV DNA had higher incidence of immunoprophylaxis failure than those of mothers without detectable HBV DNA (P = 0.002). The factors including gender, birth weight, gestation weeks, the rates of maternal HBeAg-positive, and detectable HBV DNA did not contribute to the no response to HB vaccination.Through vaccination by three doses of HB and two-dose of HBIG, majority of the infants (95.7%) achieved a protective level of anti-HBs at 7 months of age. Maternal HBeAg-positive and HBV DNA detectable were associated with the immunoprophylaxis failure, but not contribute to the non- or low-response to HB vaccination